It is not like OpenBabel one may comfortably run (for one or a few data) via GUI ( obgui), and equally/more performant for larger batches of structures from the CLI (which then remains in the CLI) via bash, or a script (e.g., Python). I’m not convinced starting Avogadro from an entry of the program launcher/GUI or from the CLI is going to yield different results eventually, both calls start a program which relies on a graphic library to display the buttons, visualize the molecule, etc. currently labelled as “Too young, only 0 of 5 days old”). As by today (), the more recent version did not transitioned into bullseye, nor testing (e.g. With the stability stability of OS installed in mind, I did not intend to mix packages from testing* with more recent ones from sid/unstable (according to the package tracker offering 1.11.3-1), or experimental. Installed via the apt package manager (equally recommended here), flatpak for Debian 11/bullseye was version 1.10.2-3. **Please consider uploading or linking test files.** If applicable, add screenshots to help explain your problem.Īdd any other context about the problem here. Process encountered an error, and did not execute correctly.Ī clear and concise description of what you expected to happen. OBProcess::executeObabel: Running "obabel" "-V"Ĭhecking for "inputGenerators" scripts in "/home/yuri/.local/share/OpenChemistry/Avogadro/inputGenerators"Ĭhecking for "inputGenerators" scripts in "/usr/local/share/OpenChemistry/Avogadro/inputGenerators"Ĭhecking for "inputGenerators" scripts in "/usr/share/OpenChemistry/Avogadro/inputGenerators"Ĭhecking for "inputGenerators" scripts in "/usr/local/bin/./lib/avogadro2/scripts/inputGenerators"Ĭhecking for "formatScripts" scripts in "/home/yuri/.local/share/OpenChemistry/Avogadro/formatScripts"Ĭhecking for "formatScripts" scripts in "/usr/local/share/OpenChemistry/Avogadro/formatScripts"Ĭhecking for "formatScripts" scripts in "/usr/share/OpenChemistry/Avogadro/formatScripts"Ĭhecking for "formatScripts" scripts in "/usr/local/bin/./lib/avogadro2/scripts/formatScripts" OBProcess::executeObabel: Running "obabel" "-L charges" OBProcess::executeObabel: Running "obabel" "-L forcefields" OBProcess::executeObabel: Running "obabel" "-L formats write" OBProcess::executeObabel: Running "obabel" "-L formats read" 35Ĭhecking for "commands" scripts in "/home/yuri/.local/share/OpenChemistry/Avogadro/commands"Ĭhecking for "commands" scripts in "/usr/local/share/OpenChemistry/Avogadro/commands"Ĭhecking for "commands" scripts in "/usr/share/OpenChemistry/Avogadro/commands"Ĭhecking for "commands" scripts in "/usr/local/bin/./lib/avogadro2/scripts/commands" QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to '/tmp/runtime-yuri'Įxtension plugins dynamically found. This is a regression against 1.94.0 which showed *.pdb files fine. When *.pdb file is opened it only shows a box in white lines and nothing else. ```avogadro2``` starts with an entirely black molecule widget. **Desktop version: (please complete the following information):** ![]() tmp/avogadro2/BUILD/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.**Avogadro version: (please complete the following information from the About bo … x):** R = archive_read_data_block(ar, &buff, &size, &offset) tmp/avogadro2/BUILD/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:41:52: error: 'offset' was not declared in this scope tmp/avogadro2/BUILD/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:38:3: note: suggested alternative: 'u_int64_t' ![]() tmp/avogadro2/BUILD/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:38:3: error: 'la_int64_t' was not declared in this scope We use the following packages which were required by the build.īuild.log /tmp/avogadro2/BUILD/avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function 'int Avogadro::QtPlugins::ZipExtracter::copyData(archive*, archive*)': In "avogadrolibs-1.93.0/avogadro/qtplugins/plugindownloader/zipextracter.h" This header, "archive.h", is defined in "zipextracter.h". ![]() The cause of "la_int64_t" should be defined by "archive.h". But, the build fails in the part of "plugindownloader" due to missing "archive.h". I am making a package of "avogadro2-libs-1.93.0-1.fc32" on the RHEL7 platform.
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